Scaffold Ga0074478_1663758

Overview

Basic Information

• Taxon OID: 3300005827
• Scaffold ID: Ga0074478_1663758
• Source Dataset Name: Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4169
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Cathlamet Bay
• Coordinates
  • Lat. (^o): 46.186944
  • Long. (^o): -123.686944
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036462	Metagenome / Metatranscriptome	170	Y
F042607	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074478_16637584	F042607	GAGG	MSIRVVNNRKLEMTDDEWEMYQKIVQSYTDVTGKGEDLFIDLFEANDDGIIIFLKPPSKRRTSLEVFLFLMALMQHQHLRLMHIQIDEAVAEIKKNNKATK*
Ga0074478_16637585	F036462	AGGAG	MSQQVRLGDVLGSNLEENFKDFDLTDIQEVLEQLRDTDAIDLAHAEFLQQKALWGADVIVGYLSKIVKTVGYLESQVNSTKNKVSLEYVAPDGARTTVDMKKWAGESSPEVEKVQIKLAEAKGAKIVLERKYEILVKSHHHFKDIAAGLRKTILGYSSGTSNAAEGYD*