Scaffold Ga0074477_1620893

Overview

Basic Information

• Taxon OID: 3300005826
• Scaffold ID: Ga0074477_1620893
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56227
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (75.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.31286
  • Long. (^o): -123.99663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F042051	Metagenome / Metatranscriptome	159	Y
F042607	Metagenome	158	Y
F071164	Metagenome	122	Y
F074102	Metagenome	120	Y
F096147	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074477_162089310	F031713	GGAG	MSNKNLTIDLKARKDVDGQVFYVGKLKCPALIDCSKGVVFLIFTADQGDEQLQIAMMDKKDED*
Ga0074477_162089314	F074102	AGG	MKKQKIVRPFSFNGRSHQDMVDLLNKELPINLRYNEAMINRIHNKYPLISKTEISIIVRAVFQSFRDLLVLGNVLNFNGLFFDTKLFFFQRFRKGRIVPSMKVKLTTPPKLRKK*
Ga0074477_162089348	F096147	N/A	MATEAKSNFVNKYLEKGEDQFYRFLISYAVNKLVAIGNGTYKGVPPDQELLEYYNQFIILYRREGDTVYLDLARLFRKAAHKIYRVMLKKDMTPRNGKFLNLV*
Ga0074477_162089363	F042607	N/A	MPIKIIDNKKIDLTADEWNMYRKIVSSYTTQTNKGEDLFIDLFETDENGIIIFLKPPSKRQTSFEVFLFLMSVFQHQHLRIMYARVDDVCRQMTDKIKGKIKEIDDVLDKHK*
Ga0074477_162089364	F036462	AGGA	MTEVKLRDLIGDKLEEDFLDFDMTEIHEVLSSLQTEDATDLSHAEMLQQKALRGADILSEFLSRLVKTVAYLESQVNRVKNKVALEYKAADGRTTTEMKKWAGESSEEVEELQIKLARAKGGKVMLDKKYDILIRSHHHYKDIANGLRKTILGYGPIQNKEKIPEGYE*
Ga0074477_162089369	F042051	AGGAG	MTTVFGEVSWNDDVYPGGGGGNKNSKDLFMRLDEGSNEMRLVTQPFQYLVHKYKKEGDSGWGQKVSCSAIHGSCPLCASGDKPKPRWLLGVISRKTNTYKILDISYAVFSQIRKLARNTQRWGDPTKYDIDIVVDKQGGPTGYYSVQPISKEPLSASDQQIKDTVDFDDLKRRVSPLTPENVQKRIDKINGVEIGGKSAPTAAPAPSKVDMSDDDDEAFPDYDSK*
Ga0074477_162089376	F038776	GGAG	MSKFEINYSELETAIVKKAYRLEDVKDRIERVAFDVVRFKDDDEGANLWQIQSADDGDYIVAIYQQEPEEKVASDWSVQVSKVASALLVSYKGDPIVRIASANIGIPPTELPQAEKYLPKKLAENKKLVKALLNELEKSAKKEVLKKYPELV*
Ga0074477_162089379	F071164	GAGG	MRISEMLNAIASWLESPDNEAILLAEYDEDCLEIVANSCVEAADLLRITAETVEDLEPHAPSKLTPEAIEDLGRIADAFDSSGDEGLMKQAAVIDELLLTIAAPPNALSSRKDLEDSRIEELKKKYESINKKLSDANKIADSEKAIEQSNIMKEKRILEAPLSTRYCPDHPGTQIARIGEHVWQCELDKKVYNFETGFTMEDGTKVPGGDVSGQTQGMNLPGYTLFDTREGRLGAGS*