Scaffold Ga0074477_1527708

Overview

Basic Information

• Taxon OID: 3300005826
• Scaffold ID: Ga0074477_1527708
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2743
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.31286
  • Long. (^o): -123.99663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071200	Metagenome / Metatranscriptome	122	Y
F087140	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074477_15277084	F087140	GGGGG	MRKKSKYKPKGVRLDTMTWIVEGMTKVTDKKSAYLTMHLKNMSALDSLVKGVATKKEIDIVIGVINVAEALTTLGVGSEYKQIVLNASDALMNVCKRSFELNDRFICRGNEIVAIKDGYEVHDAQMEVCTLAMLDDALDLIDATIRAKKAKVIA*
Ga0074477_15277085	F071200	AGG	MKGGKNPARRVDAYLLAKTWKMFEMGREVDAHQLADTLEVSMRTAWLWLRTLHEMRCVHIVGWKKDTIGRDQTPIYAGGDGFDRPKSKRTAEDRRRKYHEKKARMQEKNT*