Scaffold Ga0074477

Basic Information
Taxon OID	3300005826 Open in IMG/M
Scaffold ID	Ga0074477_1484037 Open in IMG/M
Source Dataset Name	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005826 Open in IMG/M

Scaffold ID

Ga0074477_1484037 Open in IMG/M

Source Dataset Name

Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon Health and Science University (OHSU)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6127
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (11.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6127

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (11.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Ilwaco, Washington, USA
Coordinates	Lat. (^o)	46.31286	Long. (^o)	-123.99663	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Ilwaco, Washington, USA

Coordinates

Lat. (^o)

46.31286

Long. (^o)

-123.99663

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F039629	Metagenome / Metatranscriptome	163	N
F084121	Metagenome / Metatranscriptome	112	N
F093739	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074477_14840371	F039629	N/A	MIEALDEISEIPFEVFWDKFMEVCPGIYDRYTSEGYWLKMREANRILAFEYLCKFGSDQKEPWKHLQHFDLPF*
Ga0074477_148403710	F001775	N/A	MNDSEKIRIATLSFLAGVILAYVLFPKRELETIYKTKVERLTDTLYITSTDTVYIPKTKIKTEVLRDTILIDFKPQISRFETLFPFEHGSTKVSGEVLGEVLKMTATSDYKLPVVTNTIIETKTETIIKKSKGFYLGPNINSALNLGASASYVDDKYLFSYQFQPVTRLHTLGVSKKLF*
Ga0074477_148403716	F014605	N/A	MIVNLAIALTDIEGNKITNENGEFMYLSKMVGNALFSAEEKDDPIRLYELAKKVYYSEGDMEISKSDADLIKDKVKAKGFTVLVLGPLYEALKEK*
Ga0074477_14840374	F084121	N/A	MPRRKAKPSHSRFILKRRFINKFNEYTEWQDIGYGEFLSIEDVQEKIKLLIQNYKNKHMEVHFEMNGKLLDFNGNEISHPIKFTPK*
Ga0074477_14840376	F093739	N/A	MKYSKEQIKRAVRSCVFCLGKGLNCTLEMEDHPEAGEILYNYFCGLTEPRLSELLQNPRYVLKLELIQRHLTHNYK*
Ga0074477_14840378	F008081	N/A	MEESQVLNPFGHLSATKVLDENRKPSEWWIEYLEFNEILAENEFYVLFSDGLLVKKGRSKFRTSQYIKGEKFISFQKIYGGISRTSL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074477_1484037

Overview

Ecosystem & Geography

Associated Families

Sequences