Scaffold Ga0074477_1240360

Overview

Basic Information

• Taxon OID: 3300005826
• Scaffold ID: Ga0074477_1240360
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1496
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.31286
  • Long. (^o): -123.99663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004345	Metagenome / Metatranscriptome	442	Y
F028789	Metagenome / Metatranscriptome	190	Y
F036682	Metagenome / Metatranscriptome	169	N
F042310	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074477_12403602	F004345	GAGG	MIEQVIVGATGLGYLIVGILQWAKGEPSNGMIWTGYAFAQVGLWLNLK*
Ga0074477_12403603	F042310	AGGTGG	MVKLEVIEQYGYNKHGICINPFGIKPLWVQKLAERIRCNHVVTTAEEALF*
Ga0074477_12403604	F028789	AGGAGG	LTEIKGECSVELIRENEDGSADYAFNFPPEALQALTRLGILTAIQAGIEDAKRLNPEEYDDRQDQR*
Ga0074477_12403605	F036682	GAGG	MTDKISGDGVACVDHDYFWRPIETAPHGVKLQLLSIYGVASHGLLSPAIIEDGFWMGWTPLPKKRKEND*