Scaffold Ga0074476_1176123

Overview

Basic Information

• Taxon OID: 3300005825
• Scaffold ID: Ga0074476_1176123
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 664
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.28562
  • Long. (^o): -124.05179
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076772	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074476_11761231	F076772	N/A	KVLSKEDAISMLHQLHDERAENLQLELAIERKLSSAEAWRAVAEHNIMDPSDVPDADHHHQLTLADIRSISTARYPHLDFSEASISTEEMEMVVQAIQSQAITPAEQAVGRFTRRKLRSLSTWDQWRAGKHKQLDHFHDLKMYGKPVRKPPGAIVLRPHWQHPIKRDGTQRSRNCCDGLPRSAPLLHGIASTYSSCVEQPVQRLFFALAARENYRV*