Scaffold Ga0074474_1308370

Overview

Basic Information

• Taxon OID: 3300005824
• Scaffold ID: Ga0074474_1308370
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.180_BBC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2433
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.26975
  • Long. (^o): -123.94603
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012217	Metagenome / Metatranscriptome	282	Y
F105059	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074474_13083706	F012217	N/A	MKYRVNYTYFDQSKMRAAKWEQREKDFQTMEEALLFIKKNDWNVSFRNANIQPVP*
Ga0074474_13083707	F105059	N/A	CYDWGYDVFVDGEKIGQINDTPEELADLLNEYFNSKEK*