Scaffold Ga0078746_1008685

Overview

Basic Information

• Taxon OID: 3300005821
• Scaffold ID: Ga0078746_1008685
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf, PM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2029
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F005454	Metagenome / Metatranscriptome	400	Y
F023593	Metagenome / Metatranscriptome	209	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078746_10086851	F023593	N/A	MSKMNEIDEIAQYQADVILETLKEQVEWAIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDLVDVDNYKQNTIISG*
Ga0078746_10086853	F000352	N/A	MRNIKLTDNDCTFVHYVLRMYATQTPGLDSEDKEEIREVAAKFK*
Ga0078746_10086859	F005454	N/A	MRIIKHYNPHFPERETYKCTIRYATKFGSLDEVNQWRDDQLKNEDYYKSLEESNTKAAGVFYQTLNYKGD*