Scaffold Ga0078778_102424

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0078778_102424

Scaffold Ga0078778_102424

Overview

Basic Information
Taxon OID	3300005815 Open in IMG/M
Scaffold ID	Ga0078778_102424 Open in IMG/M
Source Dataset Name	Microbial communities of produced water from Jiangsu Oil field in Yangzhou, China - Well_W9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, San Diego
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1139
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Petroleum Reservoir → Microbial Communities Of Produced Water From Jiangsu Oil Field In Yangzhou, China

Source Dataset Sampling Location
Location Name	Yangzhou, China
Coordinates	Lat. (^o)	32.0	Long. (^o)	119.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F098159	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078778_1024244	F098159	N/A	EVELSKEFEVWARVKNTGTAAGEIKLCADIVFPDGAVAECLCDKTVTVNPGQSLDVMLCRMSFAVSGNFTVKVGNLSTTVTVKEAPVEVVKEEISILREGDTVYRVISNTVDVKPGEKISLRYWVEFNRIVDAEAWITINGQTVAKNRKKDLLLKVEVTNIVAQAPMQVCGDYKIYSGG*

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