Scaffold Ga0078778_102149

Overview

Basic Information

• Taxon OID: 3300005815
• Scaffold ID: Ga0078778_102149
• Source Dataset Name: Microbial communities of produced water from Jiangsu Oil field in Yangzhou, China - Well_W9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, San Diego
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1308
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Petroleum Reservoir → Microbial Communities Of Produced Water From Jiangsu Oil Field In Yangzhou, China

Source Dataset Sampling Location

• Location Name: Yangzhou, China
• Coordinates
  • Lat. (^o): 32.0
  • Long. (^o): 119.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024691	Metagenome	204	Y
F041530	Metagenome	159	N
F047350	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078778_1021491	F041530	GAGG	MAIEKMERKQKGVITKISGKLKNVEFRTRRDGRIELGARRIPKQPLSPAQLSVREAYGKIYQKWTQLSEEEKAYWNELGKAEKLSGWNVFFRENMKAQTFKIILDCSGMSTTYENYTLIMFVKDFQDLYNALNDDLTNIQVLDSDKTTELQFFRLITKRESTDPVLLINIPSLPPGGYYEIYIKTSMRFNNPGTPGPSFFAFFDDFT
Ga0078778_1021492	F024691	AGGTGG	MRYHTEGQRDKRKLKTHIPLVEVKASKRKSTKHDRVLVILSTLIRNFSERVNVDHVKPPIALDKTLKLTDERGRKYDIAFIYEGELFLIEVKRCGKWQ*
Ga0078778_1021493	F047350	GGAGG	MVNTETLISVAIVLFSAIIVRLENLNRRISRLEGKVEILCDTIQRDREIREN*