NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079971_110390

Scaffold Ga0079971_110390


Overview

Basic Information
Taxon OID3300005807 Open in IMG/M
Scaffold IDGa0079971_110390 Open in IMG/M
Source Dataset NameBasalt sediment microbial communities from Loihi, Hawaii, USA - Two Loihi Rocks
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Benthic → Basalt Sediment → Basalt Sediment Microbial Communities From Loihi, Hawaii, Usa

Source Dataset Sampling Location
Location NameLo'ihi Seamount, Hawai'I
CoordinatesLat. (o)18.92Long. (o)-155.27Alt. (m)Depth (m)5000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021317Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0079971_1103902F021317N/AMRXTXXXXSKKXQGVSDEQMXGIXQKXXMXELVTNXAEVXXXIGKPXIKKLLGLVKSL*

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