Scaffold Ga0079957_1125899

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1125899
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1346
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008236	Metagenome / Metatranscriptome	336	Y
F008812	Metagenome / Metatranscriptome	327	Y
F053106	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_11258991	F008812	AGGAGG	MIQWIGILITVLGLAYTGVKDYQKGDIKIPQVQKHLTTVKYPIQYCLMAYDPNLDKVFYLHDNGLWYDYAPEQRRYASSPQIRQNQGQGQATLGTGYRSQGTPRYAYGSSSQATAYPQRY
Ga0079957_11258992	F053106	GGAG	MAKFYVKSGTLEIIISRKDALEASIAGLLMTNKFDIIDEYFYADERGYRDYISADKDTNVISSKSVITAAGWELSADDDPLP*
Ga0079957_11258994	F008236	N/A	ILADGDSLPDMWFYTHIYDDRLVSLEKYMNVYASVHDDKDMGEAMAQGFKLFAWCDSDMKIAPKRPKSKVKAEAWRKSLPKLVVLNGAKFVTCPEIRRGRSVITCTGTKDSISCDMCVKGLANVLFPAH*