Scaffold Ga0079957_1072672

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1072672
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1978
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F034813	Metagenome	173	Y
F038106	Metagenome	166	Y
F046912	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10726721	F006060	AGG	MLKFEGIAKVGDMIRAYDFAPCAGRDDAFIEGVVEQANCNEPGFNCYKITVTADKFRKFETKPNKKNRVGKIMFVPHQTSFMEFDFRVINLSRG*
Ga0079957_10726723	F038106	AGGA	MKLSYQQKEDIMQSIFANHHSPVGFRSVYKGVPIDNYEQIKQFIDFTKYFVMFRGPRPRFNQSSTRKRDAKAFDVYERDARTVREIRIERDAFNRGVQWANNRSH*
Ga0079957_10726726	F034813	AGGA	MSYDSDVENVYMVEFQSGRTIHVSFYELQDVKEYCADEFPNETIKTVYKEVYFGEDEDE*
Ga0079957_10726727	F046912	N/A	MKRLKLFIKKFILVKMKMNKGNYQIDWERLAKYNSVFVHIKRNPMEDVMKIDELVLWMKEYPDAMDAINKIKAKK*