Scaffold Ga0079957_1069477

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1069477
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2042
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018366	Metagenome	235	N
F028739	Metagenome	190	N
F088535	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10694771	F088535	N/A	SWMGGPEWAANKMRSFSHQELMVDDPEGFMAENYRIGRSIRGEQLIEVQMDDSWIPWIREGKAPLSWYRRR*
Ga0079957_10694772	F018366	GGA	VDSVDSRREGSVVVVPSPVAIISPFEQNYWDRFGANFVASIEALTVKPQEVILVTTARVDVPDWWKVVPYWDDRIWPCVNVGVREATAEWCTHLPIDDTMDPNFFDGLVLQGDAVNVRGRWNGGLCYGTPDQYRNLLDMRNNGMPGLAVIRRKTWLKIPYRSHKYVDWVHWCEMRSHNVEASFDSRCVWTWVRHDDALTAQSDHQAEQDVINFCGLLKSGRVVPGEDWPPKLAE*
Ga0079957_10694773	F028739	N/A	MILQDLKDRHKGEQVWVCGSGPSMGWVTPQFFKDKTVVAINEVGFVFGLEDFYTATNYSTHHPVVAGNVAANPHQIFVTPDMNLEAGDMTATHVGSGNHITFRPHAPFWRPDTDWPTDPDVLITGGTSAHIAMHLACYMGASQINLVGVDLGLVDGQENFAGYRKSNGAMDGWRQQFGVVVKKLRELYGVRFFRLQPSLELLVVE*