NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1054633

Scaffold Ga0079957_1054633


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1054633 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2417
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010762Metagenome299Y
F036198Metagenome / Metatranscriptome170Y
F055663Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_10546334F055663GGAGMTDFLNLKISQKQVVCPKHGTHKHYISSDIEGHEGHWCMLCWLETLGPSLPLVEKQSND*
Ga0079957_10546338F036198GAGMINHKTEQRRDDYLQWLYEQSGRTCSTYTGLYQERIADLIRRDMAEALGDE*
Ga0079957_10546339F010762AGGAGMNETTLDIAFKEWWEASYGRPPGTHAVMTHVAFAAHILELLELMQDDQPQN*

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