Scaffold Ga0079957_1053170

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1053170
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2463
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F074876	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10531703	F002060	AGG	MDYTSITIALLAAVFSGMGTAIVAGLKEAKKEKRRQAEREQDHLKLEIKDLKIALYQLEKELTDWKDKYYDSIQELIQVKAELENALVQLNIIELKDMDSEF*
Ga0079957_10531704	F000671	GAGG	MDKILCYSCNKSKHKLNAKKSSLLPINLLMCETCINSKFEPRWVVILAGRSNGADYVREFVLKKRYLGNEISASELLV*
Ga0079957_10531705	F074876	N/A	MELDASWRVCLVEEYYEIINIVFIHEEGIYGTVDKLGAFASVVKYQKDGLDYEVLLENDEFAIVDEIVFHHVEEDNG*
Ga0079957_10531706	F000473	AGGAG	VSSKHFYDDKHFKYGINQWTGEPNKPVFYNEEMKKKVREIKKPMLLLMDVAMYPDFLTLRLYEDNFLQFEGKKKEEVIDYVTKVKKLIESYGVRCELEGVPSGRVL*