Scaffold Ga0079957_1052823

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1052823
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2475
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F017469	Metagenome / Metatranscriptome	240	Y
F027758	Metagenome	193	Y
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_105282313	F027758	GAGG	MLIELILVSFWVLGLFAFAGAVAWLLDQLISFHQAGMERVRKIQEKEREGAR*
Ga0079957_10528234	F017469	GGAG	MKTICKFCGWEIKKPEWYNEYQGSYACDDCMMDQAIENEKERENSL*
Ga0079957_10528237	F006842	GGAG	MSYTPAICGDHLVPISECDCINYLQELKTSAERLIQLAKEREEMSK*
Ga0079957_10528238	F094887	AGGGGG	MSKELKEIDEALTSLWWSAEISDNAKLWWNDHYQQLMERELAR*