NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0079957_1052313

Scaffold Ga0079957_1052313


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1052313 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2492
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F019476Metagenome / Metatranscriptome229N
F024047Metagenome / Metatranscriptome207N
F042296Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_10523132F019476N/AMNKTKSARIVLDIEWECADDSDLPSLWDWKRIKIPMDLTKVKYVGIQQSNGPENVTNWMGN*
Ga0079957_10523133F024047GGAMTNVKKADIVDWLKNVVEKKMVKELNIPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLII*
Ga0079957_10523136F009135AGGMTNNPKYYLTVNLPPNFDDVDAEVIKTDLMAYINSKNQYGAMYGPKSHKKGITVEKVIYRTNED*
Ga0079957_10523137F013524N/AMKTNKEVIARLKEFTNNNCNTTIDPKLCEDIRYLCDEVERFSREIVKANDHMDEDFITIQRYKKKLERCETKLNNYEPF*
Ga0079957_10523138F042296N/AMNLFKRIVKWTGVLVYAAFLATVAYAATLPDPIKVYLITSSRGGEYTIEKIYLKKENAEKYRDMFKDSHNYSVEERELTE*
Ga0079957_10523139F007859N/AMKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNNYITYSMVENSTNNVYTTYTNYYRAYYNCDGKITKTTPNK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.