Scaffold Ga0079957_1045159

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1045159
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2749
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009135	Metagenome / Metatranscriptome	322	Y
F013524	Metagenome / Metatranscriptome	270	Y
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10451596	F009135	N/A	MDKPKYYLQVNLPPNFDEADADTIRADIMSFLNSKNQYGALYGPKSSKKGITIDKVSWRTNEN*
Ga0079957_10451597	F013524	GGAGG	MRTNKDVVNRLREFTQNNCNTTLDPKLCEDIRYLCDEVERFSHEIVKANNFMDEDHITIQRYKNKLERCQKKLSSYEPF*
Ga0079957_10451598	F042296	N/A	MNLFKSIIKWCGVIVYAGFLATVAYAATMPEPIKLYVIYTYKFNERVIEKIYIKKENAQKYCDM