Scaffold Ga0079957_1043453

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1043453
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2823
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003687	Metagenome / Metatranscriptome	473	Y
F015587	Metagenome	253	Y
F021097	Metagenome	220	Y
F030408	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_104345310	F030408	N/A	MTLHIALISDRSGRYAHVWSDLCTWNQFVDQLEDIGCEVIENQTIEWDGCTRDEIAEDCLSVHQLLNDSDFIPHD*
Ga0079957_10434535	F015587	N/A	MTKLNIRKNTANIMRFAASAVENAKVPTKAQAVEKLNEYRIRAAALVMPNDMAFVIQPKQGN*
Ga0079957_10434536	F021097	AGG	MQRNEFADACIVITLGIGAGMLLSVFGQKLLNQHYKNTCHNHPGHNLIYTKGFLGDTYYCINAKYVN*
Ga0079957_10434537	F003687	GGA	MTPKAVEQLLTQDARLLARRDSPVIDQELEEQRQAALEVFFQWQDGMRQFQDLMPFCIVLQHKVDLNRELLRWERMHED*