Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1041944 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2892 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009267 | Metagenome / Metatranscriptome | 320 | N |
F011222 | Metagenome / Metatranscriptome | 293 | N |
F023103 | Metagenome | 211 | N |
F035667 | Metagenome | 171 | N |
F044972 | Metagenome / Metatranscriptome | 153 | N |
Protein ID | Family | RBS | Sequence |
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Ga0079957_10419441 | F044972 | N/A | LLLNSFSRSVQSDKATVMDALGDTVAVAYYNKSATISLDGVINGGVAYELANVLTLANDTTSYGVSGGAVIVDSVSETTGAGTFKTITVSATQYPEIV* |
Ga0079957_10419442 | F011222 | N/A | MDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENAKGQDASQVYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK* |
Ga0079957_10419443 | F009267 | N/A | MKKTQNTDLVKDDEILRIQAMEDGPKKVNGRILRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSEPMSTIRGAVNDRATFINAVDSWIEKNMKHHHETTAMSDEMGKAFDLYNSASPASQPGESSGSGN* |
Ga0079957_10419444 | F035667 | GAG | MEELPFAAGLQLLHADDYVNGRHSAWANNNASVDVDALATIEDTLAKYGKIQIRELEI* |
Ga0079957_10419445 | F023103 | AGAAG | MAKFKFESLKFEQIMKDYATIREVTIPDAVMLNARLLCVELARRTQPFGDKQESGTIRVKNDIGKIIKTTDQLDEYADRVGSQRIKARLKDLIKSGRFDIVETILRNIGFLNKWTGMEVISGSKMKSVHNQARNKTTGRTKSRGSKLFIASVSDQETYISEVQKRVGISKGGWADCATQLKKVNKGGLLANFPPWVKKAMKSGSGKVQDMTSDIKNPRVFLTNNVPWASNVIPESEQANATAVVVVKMRNQMNTILKKRQKTLTET* |
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