Scaffold Ga0079957_1040543

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1040543
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2959
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F002387	Metagenome / Metatranscriptome	565	Y
F024786	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10405432	F024786	GGAG	LPVYRVFGTKYQNYYTIIEAADQFEAVDLANALPETEWNSIPTDDVIEATDVYLNEDTSEELQLNI*
Ga0079957_10405434	F000441	AGGAGG	MQQTDKYINEQLSKAQALLWSGSLHEVDEAHNIIAKLINDRMGKAEGQNV*
Ga0079957_10405435	F001781	GGA	MKPQDKDRLNECLDILDTTDLGLSLVWLWTWSTIKNFMTDETFIMKKTEDEMWDCLCEAVEAGHGFSLEYGAEQHHEDVMEWMLNRDYMVDSMFEEEEDEDATD*
Ga0079957_10405438	F001460	GAGG	MLGYTEEDLNRMINAVHDAKLFYLRSPSDLMNKDPLVKDLEDAVSFLQGLWAEGYFD*
Ga0079957_10405439	F002387	GAGG	MSDPHGIIGYYRKGGGIMASFLEDVNQMVIDAVYQDIAEQLLDDWINNNLDEGQYYADKQFAEMSGDRFIQDEFNKFYNLKEGDEDYLC*