Scaffold Ga0079957_1038525

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1038525
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3062
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F024743	Metagenome / Metatranscriptome	204	N
F046324	Metagenome / Metatranscriptome	151	N
F048935	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10385253	F048935	GGA	MNKINKLNAEFKKATKAQKRVMIAQDVLAQLKTKRYVAESGCWVQPNIHSAWEQKLSHHDSVQELFIEQKIESCNVCALGGLFMSCTNFNNNTLLEDLDSASSELGDLIEEEKLSNKLNSIFSVKQLKLIESYFEENDGYFYINSQYDRIKAFCDKHPSDKKRLQLIMENIVENGGTFVPAKLKV*
Ga0079957_10385254	F046324	N/A	MICLKVKKEAKLEECAVPWSGDTISVCNKCRMGIWDFDFDDFHSQENISE*
Ga0079957_10385257	F004723	AGTAG	MKKGDKFIHTDIIGKKYELTYTGTRREVKGCEFEFFADDKGKICFFTDTEVKKMERVE*
Ga0079957_10385258	F024743	AGG	MNEVQLYNLYSQTSNAYGEAKNAQDLTIIMNVLHLRLEHNMPLHKIAKRCGIKVNKVKLILFNYHNEK*