Scaffold Ga0079957_1035653

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1035653
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3228
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020539	Metagenome / Metatranscriptome	223	Y
F024771	Metagenome	204	N
F032656	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10356531	F024771	N/A	KNYLNISEDRFVQYCTSRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKSFPDYFVYAPKEAHKQEQFFVELKNATWEQGKTLAKIKVRDIKRYIYFEQSFTNYHTRFTICFPLADKIIFKSVDQILKLLPKSQLKCFPNDNIEYFEVQLN*
Ga0079957_10356532	F032656	N/A	MNFYLVTYAISFVKVNDESIKEDIAWCRFFDTDSFVNANSFLSQLKTVKKLRITNVEFEVEECNWYDYYEDVSNTIH*
Ga0079957_10356538	F020539	N/A	MARTTNEELISLRGHITGIKREVKILGTSVYKLEKQMTSLYWAILCGLGALSLALITIFLAK*