Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1034755 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1034755 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3282
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3282

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016243	Metagenome / Metatranscriptome	248	N
F017597	Metagenome / Metatranscriptome	239	N
F019778	Metagenome / Metatranscriptome	227	N
F022147	Metagenome / Metatranscriptome	215	N
F024477	Metagenome / Metatranscriptome	205	Y
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_103475510	F016243	N/A	MNETQIIKIVIRLATRPKWSIEARRDRVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQIHKPSFLNTNTVKDSKAEFTQRLLEVADSRESLKVQNSEITTHSIYHKVDPGLRIALNNNIVTLLTIDNELIDLKVIYEFLIENCENE*
Ga0079957_10347553	F019778	N/A	MSSNVASQAELIFLYIGESRLIKRISNDILLVLHEDAKSINTIKLKELLQFKIRGRLSYLNHLAMSTVREEAKYASALYTQLDSLLAILSSDDKVTAIKLITKICSAYRASRETRQGHAQISNSSEKMEIG*
Ga0079957_10347554	F017597	N/A	MKKISKSEKLLIKLAIQRKELIKITKSSKSTLIKTEMIARILITALKAKQVIAIRFQVNRTNNLQIWGQSPNILSA*
Ga0079957_10347555	F024477	N/A	VSYDIIKNSSKASSFELLIKNITLVERVEDFYKELDQITSYRFNCHGKPDPDIYFMKDIVKIKVMELERLQTQKINELIKLSQ*
Ga0079957_10347557	F039941	N/A	MDIETLALRLEEIKLSRIEVLEEKKVLAEELLDGKLRIELKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHARYKQQSS*
Ga0079957_10347558	F037570	AGTAGG	MNIKKLDLLKIRNLKFRASQRQVVIDRLLRKEDLEKDLWKVSIKTLIILAKIKFRCEELERISENLQQTVINGY*
Ga0079957_10347559	F022147	GAG	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKENYPLQEVIIFHNKRCKIQKSKDIATLEKVAIANKLLIKTLSEEIRNALKEQLALVSKVGSTFTNLSLMYTYIENNDSGLQSEAKSRQWSNEYQET*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1034755

Overview

Ecosystem & Geography

Associated Families

Sequences