Scaffold Ga0079957_1031670

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1031670
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3490
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F005630	Metagenome / Metatranscriptome	394	N
F005879	Metagenome / Metatranscriptome	387	Y
F056338	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_103167010	F056338	N/A	MNYYDCEVLGDRIEEFEELIKESNTMDMMLEGRNRTIAELENEFPMLNICDVMDWIYSTFAPGKNQWEMSYEWECQKVKEFCRNFNVYLYEKPRQSFFKWEGIEEAEKGGYRGVIFSDLS
Ga0079957_10316707	F005630	N/A	MANLYEVDGFYGTRNRGTIFVYETRSGKRWYCVEGSCNINCTYDEIVDGTNVETLSDVDTMSSRNGIDSVRELYDFVIN*
Ga0079957_10316708	F005879	N/A	MFNEKIFWKEDFTDGEAKGGFFIRAVDLKKFLQSVEDAEHGGEIVGLRLSDNNLEVIVKPKN*
Ga0079957_10316709	F002303	N/A	MDIRQECREKAIEFAKEWGYENVSSHILDIMVSIMCTRDKSSYAGGGFVEAVVSNNLYLAMSRADTECRNNIFLLTMCNMNCYV*