Scaffold Ga0079957_1029958

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1029958
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3619
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F005697	Metagenome / Metatranscriptome	392	Y
F009503	Metagenome / Metatranscriptome	317	Y
F021065	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10299584	F005697	GGA	MGFLDNYEASRERLERWLKTYPLGRIETSIVEFSADKGYVLVEAKAFRHEDDTRPAAVDFAYGYQGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVEKTSAKVANTDKDYDYWTTKFGEVPSYKTEEEMDAAGFQTLASGVAEIAKQLGGELVPEAPQCRHGHRIFRSGNSAKTKKDWANYSCVGRKPDQCDPIWLVLTSDGTWKPQV*
Ga0079957_10299585	F000403	GAG	MEIINPQTMIGKLLKNGEVVEEYKMEQCDKCSSLVRFDAFGYQKGYGNEKIIWFCVGCR*
Ga0079957_10299586	F021065	N/A	MTLTRQEEFTCHDAAIHLAKANTDYWQTRSGGYSTEKSLHDLIAQDAQSIGSEWVVAKYLNVEFDPFEQKGKTKADVGSHFEVRWTKYVSGQLIIHEYDRTDDVAILVTGESPHYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRKSNYGHSAI*
Ga0079957_10299587	F009503	GAGG	MDTVQFECRNCKKITKQLIQKVTDLLPPNVEIIQCVVCSFMTVAQVKQ*