Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1029157 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1029157 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3685
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3685

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025233	Metagenome / Metatranscriptome	202	Y
F043354	Metagenome / Metatranscriptome	156	Y
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10291571	F043354	N/A	MYIMEKLKKQVRNYQLYVDKTYVQYEQDGYSAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQITIKYSNAIFNTLFPNSPITQFLLADTETD
Ga0079957_102915711	F025233	N/A	MHLVIANLMFVLQLHSGVIIPTGDVDGRATYSIPAAGIEYAYKAEIIQYLETGKFDYDEDLKD*
Ga0079957_10291574	F049561	AGGAG	MTKIKLELEETDLFNAVKKIINHPNGEEISKALTSIIAPNERLTSIFFKTYFMGMAPEILPNGTMITVSPRDLSYKANIDGMKRLGLLNISGHATAIIKEFKGFSDYTTYIVNFMNVDENDRTFEDTGFIAYNQVESIIEDL*
Ga0079957_10291575	F096905	N/A	VESKIFTSVLGFNFELNLVDNDGEPIKTGAKRIEYLSSDVPNVGTKIGGERWFTNFNEPLLSKIRDYRRRND*
Ga0079957_10291576	F098924	N/A	MNVLGKLFNKKKTYPKDNKFEVLIIGEDKSDFQEMLGITDKRKDELLRLAVESYKDHDLFTTSCQVAVAKCTHINEVVFLMTILTKIRELESNPLSAILSSIGRGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1029157

Overview

Ecosystem & Geography

Associated Families

Sequences