Scaffold Ga0079957_1028496

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1028496
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3738
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006743	Metagenome / Metatranscriptome	365	Y
F042880	Metagenome	157	Y
F051794	Metagenome	143	N
F052570	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_102849612	F052570	AGGAGG	MRKMKYKLPKGVKLEIDDYDAERKDRQDSAFYTWGDSHRVATLTYKEREYYVECVGEMRIIYKGDVLRYCDRLIKAGIKNDKDLAKIEESGGEWINNSWFEVYDESSGEYTGEVYHEVKDAIETVANWIIAEREEANV*
Ga0079957_102849615	F042880	N/A	VMSNYRTVGELIEHLKGEDLNAPIIYQYYLAEHFEISEEVFGQVAGDFDSLIPCSDSYEVISKEINSKREEANV*
Ga0079957_10284964	F006743	GGAGG	MRTENWQSNTPGLRLVGEDESGSASSPYGPMRAGLTTTHRTQLLVLSELLSSLEKEVEILHSKYCEAYVILIDVMERLARLTSSLLPTDIIKEKDV*
Ga0079957_10284965	F051794	GGAGG	MKTIDKRKEKAERRAVWLRNYQRARGRALTKLAQQYPDQYKEILEQERLSDEANGKAWLDITGATDNSAGVLTNADGYNNTLRSEQADRDEQNEGYLGGEK*