NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1024989

Scaffold Ga0079957_1024989


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1024989 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4068
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F003299Metagenome / Metatranscriptome495N
F003327Metagenome / Metatranscriptome494Y
F004234Metagenome / Metatranscriptome447Y
F015420Metagenome / Metatranscriptome255Y
F071222Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_102498910F003299N/AMCQLKMIAMKMYKVVFKTFDYWNGPVKLVTRIIEAYDRNHVKQLIQKNDDLIMLIEEI*
Ga0079957_10249893F001808N/AMRYLAIIILLSSCSAQYHLNKAIKKGYTCEQTGDTIRITTLDSIPIIINDTIMWEKFITTKDTIIKYNTVYVPKTRLDKRIEYKLKVKTIYKDRIVQKAQAKATRPKTRGNLNLLFVGVGIGLLLSYLFKFAREKYLF*
Ga0079957_10249895F071222N/AMDKEQIMTIILAEEASLYDQAKDMAEAFGRKDEATIRAYAQWYAITNLIDRINEETN*
Ga0079957_10249896F015420N/AMKRLINYFTPVGAEQKACAIAMLIVTTVILSILFLFTFLELIL*
Ga0079957_10249897F004234N/AMNFIDLYKNGNQYISNWTTDYDSDVYIAGTIEPFTYNATETDDGDMSLFPLSDANLNLLKSKL*
Ga0079957_10249899F003327GAGMINEFTQLAIKVQDEIANGDYTHQKYLQFREWYFQNYDGSKRNAARDFKMFDLMYGLDVPIKNDSNEDV*
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