Scaffold Ga0079957_1024128

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1024128
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4162
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019644	Metagenome	228	N
F040082	Metagenome	162	N
F058107	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10241284	F040082	AGGAG	MTQDPFAMSQEINELQTRVAELSVALERVTEQRDNAVDAAESLHQELEACRDRIKSLGGQLDRLRIHLQQGIEL*
Ga0079957_10241285	F058107	AGGA	VITIGINTYIVCQLCDGEVRLDPQRITGCLCDPDAPTWVGIEPNGRLLAFSQSKYEIVKERQQ*
Ga0079957_10241287	F019644	GGA	MMNEDEDPLDDRIKYFIESQVDADNVCTAYVLVATIQNYVTTEQKFFTICPPEQVTSTTIGLLESASAAEKLRMARQLLEDD*