Scaffold Ga0079957_1023644

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1023644
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4218
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F003965	Metagenome / Metatranscriptome	459	Y
F005348	Metagenome / Metatranscriptome	403	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_102364413	F003965	AGGTGG	MTTLIINDTCKTHVPNKSAISNVGDDQFTFCEMCEQNIERWYNDTDPERLPMWSDWKVSN
Ga0079957_10236442	F003393	AGGCGG	MKTIEKDDTIPIMDYVKADVLTAGQLMVDDLIRVADEVVSITEIISLSDGYTLEIINDFGERELIQVGEYEQFDLMILQ*
Ga0079957_10236444	F000808	GGAG	MEYNYALTTSYDGELIHTLRVSDMLEAVSAWDKCVDYGTAKQYATYNLSDPTGKMYTKTFYTNGEVVIK*
Ga0079957_10236447	F005348	AGG	MINSVMRFDCDECSGSGLIFWGDDLNYDVEKCECQDFALGTLFTTKESD*