Scaffold Ga0079957_1022709

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1022709
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4329
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F003603	Metagenome / Metatranscriptome	477	Y
F026195	Metagenome / Metatranscriptome	198	Y
F035764	Metagenome / Metatranscriptome	171	Y
F045752	Metagenome / Metatranscriptome	152	Y
F061853	Metagenome / Metatranscriptome	131	Y
F084237	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10227091	F001280	N/A	MVQDSATTVSNMCVECGCGALGSSTGIANIPGGILDVSRDGEAGLTLNMTATPEQRENFINE*
Ga0079957_102270912	F003603	AGGCGG	MKTKEQQVAELLCNYSEDHFFNPASLGGFLADQPTYTLDRIMEVVTWVIEKQARRYEREVENGGLVSEGLALAYKLDQVVDKIKDKNTFNNLKLPITNQERKAIIDRMPKEKTGDYKYSWLHETNNTNKVTIEHPFI*
Ga0079957_10227092	F001176	N/A	MDTPPNSQPSGAVTSQEAARKNPSQGKFRSGFSGPRPATKIDTNKHGIRRETVLGQKKTKPKKV*
Ga0079957_10227094	F061853	AGGAG	MNKKTVGLISLGLALAAIAYVTYNSLTQLKDIDYDLFDIEEDIDSEE*
Ga0079957_10227095	F084237	GAG	MTNPDRDRSMRLKLAIEEMLKDIDMSGEEWNDRDKNGVAYWEKYEERLKYMEENGI*
Ga0079957_10227096	F035764	GGAGG	MIDKLISILFKWTGFREALFAEVNMYNSLTRIMKDPKSMEIASAFWEESDGWKGWTVEENKYYFNDIPEHDLMGVMESLEEMTSR*
Ga0079957_10227097	F045752	AGTAG	MADPNQTPARGNWACPCSGCSKAVAFERDNLVELILLHKAEYLIYRGSSFDAEGNLMWAKDDALAYSEGLDYVVKLIEDRKPKPKKKG*
Ga0079957_10227099	F026195	AGGA	MMGFLDNLEEYIDFTEDIDKDPELESGYSTGKWSDDDDFGITPFLGPNR*