NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1021946

Scaffold Ga0079957_1021946


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1021946 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4428
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005092Metagenome / Metatranscriptome412Y
F007363Metagenome / Metatranscriptome352Y
F013526Metagenome / Metatranscriptome270Y
F026861Metagenome / Metatranscriptome196Y
F049499Metagenome146Y
F058095Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_102194610F005092AGGAMDKLEYALNAIRNCNACEGKGNLYWAIGDDFDFETCECNPYELILDDDGDVIWDNGLLSEPELAIFGSKEAN*
Ga0079957_102194612F058095GAGGMDYNYVLTTSYDGELFSTHRISDFMEAHEAWAKCVDYGNAKEYATYNLTDPTGKMYTKNFYVNGKVSIK*
Ga0079957_102194613F049499N/AMTDTIIRMDYRMVDVLNADQLEEGDLIGLGDEIVKIIDIATQPDGFSIVYENEFGEKDLASISDDEQFELFVYD*
Ga0079957_10219463F013526AGGMKKNILISFVTEADTELDAIFALNKVMYKLPESDVVKFDAFEVLDVVE*
Ga0079957_10219465F007363AGGAMKTYSIVDLLVDQYYAPRSISRRFNGGIINYAEKRENVYLSEGYEAYSIRFRPTGSIQDQWATVAVKVAD*
Ga0079957_10219466F026861AGGTGGMKLDEFKALIESQRKAQQLTNLEKIAKIVNNTNTKKGKN*
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Institute for Fundamental Biomedical Research
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