Scaffold Ga0079957_1020983

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1020983
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4556
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015946	Metagenome	251	Y
F018912	Metagenome	232	Y
F022868	Metagenome	212	N
F073084	Metagenome	120	N
F102547	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_102098313	F102547	AGG	MGIFPYIKRKENMKAKFNIIYVPDTINGKKNIEKKSVCRLGVLDEKSKIFTTTSGELAFCYFDLDRNNYRTAKNKWTINLQV*
Ga0079957_10209833	F015946	AGG	MRKKYKIVDWVSNRIFPDKTFNTFLDAWDYLLQKFPSDEDLQEFYVVDINHKERN*
Ga0079957_10209834	F022868	AGTAG	VKEKDLYKRFVNETPKILHHRIENFIGVGFPDDVLYINNKFYTCELKYTDHNKIKISPFQISFAIQHPIGHYFLIGHKKEVKLFESKSIDDLLKGGFKTKNPIANNWKDIRDYLYKL*
Ga0079957_10209838	F073084	N/A	MKDNEKQKIIDWICDDYITNIKEKDWPKDSWYYVIEKAFDLYNMSPKELKEFREELKYER
Ga0079957_10209839	F018912	GAG	MAEKRIITDKLIEDYHKAVIDFNERIKKEKRFRQTLCENFISDWADVVEEIGIRNRKELNK*