Scaffold Ga0079957_1020325

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1020325
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4659
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028157	Metagenome	192	Y
F033428	Metagenome	177	Y
F041769	Metagenome	159	Y
F051124	Metagenome	144	Y
F085645	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_102032510	F085645	AGGAG	VNHDYTKPDSNGADILTEAHNLITGPRQQAYSHPFDDYWKVTQLFHNMTGIQLSIKQAITFMICVKLARIATNDQHGRWHRDSVVDAAGYLGCLSMVHEHIQQKREDAVTRFKENS*
Ga0079957_102032511	F028157	AGGAG	VNIADPKFATVLADQDGHSRWIGHIDATDIMNAYRTGGIHLLVTLNPEGDITVAFKPGRHWQTTWSPPITLERK*
Ga0079957_102032512	F051124	N/A	MAMTKKTDPIEHYLNSTGAGWCIKYVLIAVVEDEDSDQSFYIQCLENQTAAETIGLCEAVSHIQKAKIAKAWMDREAEEE*
Ga0079957_10203256	F033428	N/A	MSASEGKLVPEETVIILQGRFKKLSDKHRRIILDIAEEAHGSISMNPPTERRIGIARILLEIAEQDDVIDKDLVRSICELRTGKKYNTAGEALADLSWVDAERVWSSFQDIYANRVQLEYIPISNHYIIKEKTHG*
Ga0079957_10203259	F041769	AGGAG	MSYDLDALRQMNEEAQIRISELSTALATITEQRDNLQDSLNAAIKEMDAHKTHIHHLTTTIERLRLHIQQGVEL*