Scaffold Ga0079957_1020288

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1020288
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4665
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003267	Metagenome / Metatranscriptome	496	N
F004837	Metagenome / Metatranscriptome	421	Y
F012449	Metagenome / Metatranscriptome	280	Y
F012656	Metagenome / Metatranscriptome	278	N
F046907	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10202881	F046907	N/A	MPEFDEPVLITDIEGLQIVAWRDRYTGKWHSENHAWFNSEVNYWMPIPEIV*
Ga0079957_102028810	F003267	N/A	MKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEELDEIRVGIVGPPDQRKVVKEILDNSLVAAKIKVVVTRTNAWEQATLTEMYRASQTEDAAYLYGHTKGSSDPSLINQLWCRSMVFFNIVAWERAIAELANVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPGPDKFVITF*
Ga0079957_10202884	F012449	AGG	MDTLIFPLLISSLTALAIAEYRVLPQAWYKTWFARHKPFSCVTCLTFWVAVLLTWSTCGWILAPVYGLASAGLTVVILQVTNR*
Ga0079957_10202885	F004837	N/A	MTQDEYLLATKHRHYWDQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADQFAEANQHQVSHALNNPNP*
Ga0079957_10202887	F012656	AGG	MDSLMMVITTLCDCIGAVDDSNSPNAFAVKMKIVDKIDELIDKIEY*