Scaffold Ga0079957_1020052

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1020052
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4701
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F018323	Metagenome / Metatranscriptome	235	N
F027744	Metagenome / Metatranscriptome	193	N
F028416	Metagenome / Metatranscriptome	191	N
F045532	Metagenome / Metatranscriptome	152	N
F050893	Metagenome / Metatranscriptome	144	Y
F073465	Metagenome / Metatranscriptome	120	N
F085117	Metagenome / Metatranscriptome	111	N
F089846	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10200521	F045532	AGG	METLDLIEFPNPYRKTSFKAYLFWTGISTVANHAIANTITCIFIRTYLAMIVALILLFNKDKSIIHRLMIYLIYLEVNPRIRIIENLNYSVMIIRLGMLSMSLEQIILNPNMEIAHAIILIHLIIVAAYLPNYIDTQEAIAKTISYFI*
Ga0079957_102005210	F085117	N/A	MEQKLTTKEVDKSQEIARCRKSISETTVLLREKIQLLTVLFNKLSILERNLIGEELMGVFGNSMRMIHDISRNLEIPVKTAVAKALFID*
Ga0079957_102005212	F027744	N/A	MNSTVRKSKNKPYEPSVSNSGQRVDPALPLTIAERDAVARGVVRFNQQRQYRKGRLDNLLEALDTRHGTVFDPGNIEILIEIFNTVGLIKCAFPDKSIKWELPTHRPLPLAESLEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL*
Ga0079957_102005213	F028416	AGGAG	MNEQPINGHAIVNRPERHPNVFRIRRTWLKVANEALDLLNLIDVTQPNTAADNSLVFGAIYDKVKQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDNIYLADYELDC*
Ga0079957_10200523	F073465	N/A	MSNWRYRWRRPRPRYRPAPPAPRIEAVPIRNIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIISHQVDDQGFSELENDSETEPLVSDV*
Ga0079957_10200524	F089846	N/A	MDSNQNIFRNINKAIRAITPGVYNNAQVENLMKIYDVIVAEKEVNPSWQLPSPETRKRKKPRLK*
Ga0079957_10200525	F011134	N/A	MSTFAELEENYDSKETLVDTIKTDLIRQFKMCVDNINTEIIIINENNVEQYEDLNEVLINLRRLDSKWNINSNSDKPWKFKYMLEENLRRRILEIDISDLDTIDIDGYEKFHDALRDLRIEDPGWSINNTRRSFLVLLTSEDIGLMNNHLESREK*
Ga0079957_10200527	F018323	GAG	MCNNKYTEEVAELIKSLEENSVDLTSAIDTVRVLDELELPLFEHILINQICKDLNAITTEINHDQEDERVFRKIFHKVRVLKLRNPTWKFKQRAKKSAYSKRRMIEEERLTLSQEEARELAKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRTWLSFYRFPDLNRLTVHNGKHFLCKVDGTGSRKYSRLKWSIVL*
Ga0079957_10200529	F050893	N/A	MEEIRTVTNEIEDLVTLLLVQKESLEEKEEADPSKGSIQKTLLAIKQLNKKLEAILGNERLKMTEKPKTEVREKE*