Scaffold Ga0079957_1019946

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1019946
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4716
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006139	Metagenome / Metatranscriptome	380	Y
F029047	Metagenome	189	Y
F057151	Metagenome / Metatranscriptome	136	Y
F068473	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10199462	F057151	GAGG	MKNKPTFFAQIKNNIVVNVHVVTQEFIDENPERYPGTWVETFIDRSDKTYAGIGYIYNPITDNFSEPDIS*
Ga0079957_10199463	F006139	N/A	MAIEIVVSVIGGGFAVLVALIGKIGADNRKDHGVVHKALGRIEQKIDAHVESHEQ*
Ga0079957_10199465	F068473	N/A	MTAKAQPGVPGSRDYIGNSDGPVKGKRAGTEEWVKQAVKWSNGALWNNGTFMVRDIKGKPGTMSVHATGRAMDLSYRKMDTKGMAEGRKASKAFIDVVVANANRLGVQMIIDYWPQPFGRAWRCDRQAWKAYETKTVSGAPGGDWWHIELSPAMADNPEAVKTIFQAVFGVSTTA*
Ga0079957_10199468	F029047	GGA	MQEQPYPDNTLSEETRRMLDPTQNALHRHETVIKNLLDEICRPAHIPYKPKHAELIGRLKHLAVDLDLSGQQEAWQTVSEAIEALGG*