Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1019943 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1019943 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4716
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4716

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F042864	Metagenome	157	Y
F105031	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10199431	F000957	GGA	MTSFKHLDGMTALLSELYEINERIMTGDICSAKTAIASGRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGITYSYEVDGCEVAGSQVPRRV*
Ga0079957_10199432	F105031	N/A	MTIIRPHAKPTLWWLFPWSYARTLHTAANALRALSDRQDEALTMQAHIIVDQSEEIANLRRRVEDLNEAIIAGKAITPDAQPHD*
Ga0079957_10199434	F003714	N/A	MPNAHHAFTDHLTFAGRPVPLKRPMAYYAANRLQAILPQIAALNAAGKSQADAAAALGTTVCTLRKWLDITNTEWRNLKARGPYKTRP*
Ga0079957_10199435	F042864	N/A	MNTPTKPKATLVSDKAMVELLKRKVTTFRETASLKDKDGYVRGIGSYALYGIDHAKGQIVVLASEPTAGDFNPYVTAKAKAQVCARYDQVVEYRDVGSHSKPKVTILCWTLA*
Ga0079957_10199438	F003583	N/A	MRKAKAKAKGVDNLLVAVCLLTAFAGLTAFASAFVAGYVLDQLQSTEALALIVTDGVLKSDSKDLEQNISAATLALKSVRDLGWALAVGCLGVGVAVFIRFRRQNAS*
Ga0079957_10199439	F001923	N/A	MSAAPFNPEDIPKEAKDGLVAATLGGLAMVARLLLSTEPVTLGWVVRRVMAAAITAALVGYSIQEHIASPGLRMGVVGAAGYAAPECLDYLMKYLKARGDKEVGAASGKPSKDAKGKGKGKRGR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1019943

Overview

Ecosystem & Geography

Associated Families

Sequences