Scaffold Ga0079957_1019902

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1019902
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4722
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F009682	Metagenome / Metatranscriptome	314	Y
F027178	Metagenome	195	Y
F036669	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101990210	F027178	GAGG	MQKYIVMIKDGGKWEEYARFKSLDLAKVTLELVKKDFPAKIVEIK*
Ga0079957_10199025	F001840	N/A	VKEEKESEFLICDCYSHGLLVERLDDEEELCLSLFERGLSGRTLCWSSRLRWCWQILRYGKPWSDFVILNTENQKKLKEFLK*
Ga0079957_10199026	F036669	AGGAGG	MGMYDSIECKCFLPMPDEPKGYTGSHGFQTKDFDCSLDIYIIDENGQLFVERRETEWVGGDPNGKSFLEKSGHLRTIKTWLESVNKTCTVQFYDFFSSNKTDYDYWIVYDAVFIDGKIKDIKLTTFEATPNSERKKKDIEFHKKMQEWDEFRKTRRYKYLLNPYNKILKFVCDKVYKALCFLSSRVWRVHKFLMIK*
Ga0079957_10199027	F009682	N/A	MKKDLYMKNSNEKIVIQSDDLKYDGKNIVIPSYYDSVIFDYLDRVDVKDMNDADYQDYIAFRRFFEDIINYKADKGGN*