Scaffold Ga0079957_1018085

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1018085
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5018
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F036701	Metagenome / Metatranscriptome	169	Y
F056338	Metagenome / Metatranscriptome	137	Y
F088906	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101808511	F088906	N/A	MEKQSSRIVNKGLAGEPQHIVLQVLDTLKIFEFSQIKHVDEAGVIRDVTLVNHEIHQPEILHILNNMGHVVDITFDEDENVTIYF*
Ga0079957_10180855	F056338	N/A	MNYYYDCEVLGDRIEEMQELIKESNIMDTMLDGRTRTIAELEKNFPMLNICDVMDWIYSTFAPGKQCWEMDYEWETQHLMTFCRNFNVYLYEKPRESFFKWEGIEEAERGGYKGVVFSDLS*
Ga0079957_10180856	F005630	N/A	MANLYEVNGFYGTRNRGTILVYETYSGKRWYCVEGSCNINCTYDEINEGCDVERLSDFDTMSSRDGINSARELHDFVIN*
Ga0079957_10180859	F036701	N/A	MDLLTILLVWVLLSYPIVRHVNTKMEEANDTQRFRVAFQLVLFIRAQFEVPKWYFIQLTKLLSK*