Scaffold Ga0079957_1017907

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1017907
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5047
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050331	Metagenome / Metatranscriptome	145	N
F066729	Metagenome / Metatranscriptome	126	N
F074804	Metagenome / Metatranscriptome	119	Y
F082597	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101790710	F050331	AGGAG	MKLKRIKSEADREVAIQWLCQKDFEFINEGDGAGLELLDSILENGFKGYGNYTDRELNDAIAERKEMERMYG*
Ga0079957_10179073	F066729	AGGAGG	MKKIQIPKNSLWQYIDKSHIDPKIQDEIWEEFVLSHEDEFAEKASELAQEMWNNYNQGVA
Ga0079957_10179075	F074804	AGGAG	MIDDNLYNQRDEFFLDIQKGDLVFLQADDGSEIAGIAVERSIMGWMLEGGVEVTEYDNYLGHISRSQLTGMAA*
Ga0079957_10179077	F082597	AGGA	MTLSSYWHDLKEFTTGYEPYTVKVDYTYEEEPLEDLFPEESEEWYKTTARRVERSEMPYVVARARVFLAGVELANNTLGGLLFDSWEEFELSMTQDDHGLIAETVADAVIQWDSMKKLMNTQPKVVA*