Scaffold Ga0079957_1017537

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1017537
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5111
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F002794	Metagenome / Metatranscriptome	529	Y
F006139	Metagenome / Metatranscriptome	380	Y
F007579	Metagenome	348	Y
F010535	Metagenome / Metatranscriptome	302	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101753710	F002794	GGAG	MSESAAWNQGELTEETRKLVLEQTAMTNHTMAMFGLIDEIMAVSKNPHASIIQRLKTMKNQLSLENPMPLYDVT
Ga0079957_10175374	F007579	GAGG	MATKAEIDSQIGNATRELAPGTTWKYNAPGDGYYCLEWMDDPALQPTEAATMAKATELANNPQPID*
Ga0079957_10175375	F006139	N/A	METEVVVAVIGGGFAVLVALISKIGRDNKKDHGEVHQTLGRIEQKIDHHVENH*
Ga0079957_10175377	F001872	AGCAGG	MNEFIKQVLHHSNNAMWNNGSWGVRDVRSKPGTMSVHATGRAVDLSYRGGERHPNASRKAALPFVELLCAHANDLGIEMVIDYFPAPYGRAWRCDRQAWKKYSKPTVSGSPGGDWFHVEITPQAADSVIFVKAAFLKVFGEIPPKA*
Ga0079957_10175378	F010535	AGGA	MTDPQIVDYSVYTGVMDNGQEILVQIFSSPESGKFLMGQIAFRSHASSWGVPIPLEKR*