Scaffold Ga0079957_1017170

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1017170
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5175
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001150	Metagenome	764	N
F002644	Metagenome / Metatranscriptome	540	Y
F011486	Metagenome	290	Y
F015091	Metagenome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101717010	F015091	GAG	MSDVQQLTQITKALTIVLAMADFIGKDDVEQHLRWAIKNYAERIYLQSIVNN*
Ga0079957_10171705	F011486	N/A	MTKPYVITKQPVVTSALAGMAKWVELCCKHSDGSLWNNGIWVNREMRGKPGIISNHARGLATDVSYRWQAQAKKGRQDGRKISLDYLNKLLLNADTLGIQLVIDYAQSRSWRCDRGTWQIGKFDAGDWYHIEVHPRLANDVEATKQAFQAVFGASPKAAPKPV*
Ga0079957_10171707	F002644	AGG	MTENIDPRTDPQFKALMQVMNDITGNKVPFYEPHELAARSTLRALQHIIDDSNALDDSDLIDTCNQARIEIRYLCSIVTDLHERIKQRDIEIGIQQLRLNENEVEIQRLEHVVHRAN*
Ga0079957_10171708	F001150	N/A	VLTKHDKSRIAVAIAESQASANAKWSPEQQTRVDAAIVKMARMKPRFTADEVWYELGASFPVTKGMTARLMVAERRGVIKNTGEITYAKRGGQHDHAQRLTIWQSL*