Scaffold Ga0079957_1016522

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1016522
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5303
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009333	Metagenome / Metatranscriptome	319	Y
F025026	Metagenome / Metatranscriptome	203	Y
F104551	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10165224	F009333	N/A	MNTLRFNRHELFTEDWMVYHSVTIREVEYFFLDNGQSYFNPLTNQLNGVWDGYLYTEMLEMAKQMGLPTNLLQRIANVIQFIGTSVNS*
Ga0079957_10165227	F104551	GAG	MKLGLVRMSGERVIGVQYFESKFSRELGEILRINGVEWRVGVIAEDRNSIIKVLNEIVRIQNSIVRKKQRELDREINYQINQMFIQAYKSVMNQ*
Ga0079957_10165228	F025026	N/A	MNDFDFFTVNASSNRITSLMRLPNVRRGNIETRVYNGPLGYSYRFYKVTLEYYDVMEFGHFGARKRANEYVESLLATKPDDVILSIKFHPVD*