Scaffold Ga0079957_1015243

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1015243
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5580
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F018349	Metagenome / Metatranscriptome	235	Y
F031384	Metagenome / Metatranscriptome	182	Y
F047643	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101524310	F047643	GGA	MYYQLQAPTTAALKAAYWEAEFAGLDPYWLKSNVFEIGTGNIEKVSSLISKYKLDILVETDYQPTGYRR*
Ga0079957_101524311	F018349	AGGAGG	MDYRDGFEDGVKFTREVIINNIRKWAETHEDGHTLDWVADQIEFGTLDNDL*
Ga0079957_101524313	F000450	AGGA	VGDRANFGFVQPNGETIVLYGHWAGYNMLATLAEAVAKAQPRWNDPSYATRIAISNMIGDGWGFETGWGLHVNEIGDNEHKIAIIDWNQLTFSLHEEDSHYNLDNKVRGMKNTPLFTMDLRAFVEKYTDVPILV*
Ga0079957_101524314	F031384	AGGA	MPNWVYNGLTIEGNPQLINTLVAQLNKPFAQVHDSWNMEAGQMQKKQTTYPNPVFAFYNIYNHLQAGITEYE