NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1014912

Scaffold Ga0079957_1014912


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1014912 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5655
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005092Metagenome / Metatranscriptome412Y
F013526Metagenome / Metatranscriptome270Y
F016958Metagenome / Metatranscriptome243Y
F029721Metagenome / Metatranscriptome187Y
F040535Metagenome / Metatranscriptome161Y
F047645Metagenome / Metatranscriptome149Y
F057310Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_101491212F013526AGGCGGMKKNVLISFVTEADTDLQAVFNLNKIFTKLSESELEKFDAFEVLNVE*
Ga0079957_101491217F040535AGGMLNLNYVVEKEGNLITVSDRLMINEYQINDLMDSLVANGFTVEAMSVAPATL*
Ga0079957_101491218F057310AGGAMKITYSVWQGSLIKGSRFTASSMKDIAKVIDDLNSTGASPKFEAFISLVEQENN*
Ga0079957_101491219F016958AGGMKLTITSMSGNTSSMNLPTKEDVYYFIDLYKTSLKKNQRVKITCDILGIDGYLQGTAPLR
Ga0079957_101491221F047645AGGMPCRHVYEYVYSDICPDCGRYTHELNKELSSKLFKEYYASGKNKEYICPVEGGTIRGWWS
Ga0079957_10149123F005092AGGAMDKLEYALRAIQRCNACDGKGNLYWGIGEDFDFETCECNPYELILDDDGDVIWDNGLLSEPELLMSGEAR*
Ga0079957_10149125F029721AGGAGMRSYSIEDLLVGQFYRPTSLARRFNGGEINFAEKRDDVWVGQNYQAYAIRFNGDKWATIAVKVSDL*
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