Scaffold Ga0079957_1014488

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1014488
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5759
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F039506	Metagenome / Metatranscriptome	163	N
F090286	Metagenome	108	N
F093750	Metagenome	106	N
F103226	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101448812	F090286	N/A	MSINMNILNLFKKKPSEPETPKIETLFPEQHYVKISLEIEYLLGKQLYIYNSNYVVTCENEQMFNEGKEKQSKIFSAIIKDIHEKLDDKSSDYVRVGESMLLKKSDFVNARIVYNYKKTNEHPRS*
Ga0079957_101448813	F000962	N/A	MNIHVPEELRKKYPQYEFRGKRREINDRIVIEAYNPVTEQTFYYSFEEDFFWMAGQIPDYKLEKVI*
Ga0079957_101448817	F039506	AGAAG	MKYVKLIAKPDTWFKAGTEVFDYNEFDKRITLESYNECLKSGTILVRGTRICQFSTELLIGSGYKMGEERIDGELCDINEFDMTIVDDEKDIPWPDPLDHSDKDSKEKCDQNFKDGIRYFQG*
Ga0079957_10144882	F093750	N/A	MKFKVSYYDFDTDKFVTKDCYRMSFYEGKFEFMPVDNPIRIYKSVSIDHPIISISQNDTGFISISVVGYQHMKNGWYDKTTTKIENVRD*
Ga0079957_10144887	F103226	N/A	MTKTELKKLKELDAFLRERNMELCGENIIVGFNANKYDEKDNFVRLNLRIGFLRGSLSDIAELNRIPTTKNRYYIREGKIKQY*