Scaffold Ga0079957_1013962

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1013962
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5893
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015339	Metagenome	255	Y
F018175	Metagenome	236	Y
F040107	Metagenome	162	N
F049636	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101396211	F049636	N/A	MTGKEAIKKLEEGFTLRRKAWEPDIKCKAYFSDKEVPEHSDDSEYISYFDCLDNGDFFEDDWEIVNEIF*
Ga0079957_101396213	F015339	GAG	METEVKILSEQYVRGRIWSFIRFQKYLREIAYIFCEEFNYSKDDIIEVGLSEDGKTVWIHYDSGTIGFASEFLWDENARESFRKQNEPSYPY*
Ga0079957_101396216	F018175	N/A	MLVEKLPKNQKEYYHNKIRDYEKRTGKSMNVKGVSQFYDYKIEDAEYNFQAALDLMQKHSCYIYNDSLVEEDPRSNGTHWRKYGFAHVNNKTYIYYFETEEWGKELDAFTYRQCYDKTWKAGKLVKTKFPYSIDPGEDHLPYANENKHIGSDFDNFLKTNNIELKRDINWAVKMLDAGKMMTREGNRSLTLFPKKYNHAESTITTDDLFAEDWMVVPPKTFKDVLEDLYAGKTIRRKSWHPDFGVGKYAANYGKMIYLDLIADDWEVVDVVAEVDSVQREHLKGK*
Ga0079957_10139629	F040107	AGGA	MTGIEALSLLKDGKILRRTSWEPNEKCKAVDFFGQWVIHIAKEEPEEISDEELKEIFDERFQLVETPFDDFFGLFDTIDAGEFLHDDWEVIE*